biodbcore-000028

DNAtraffic: a new database for systems biology of DNA dynamics during the cell life
DNA dynamics during the cell cycle




Basics
Country

Poland
Taxonomic range

Database scope and data types

  • Pathway Name, Pathway Description, Pathway Images, Pathway related Proteins and related Citations, Protein name(s) according to UniProt nomenclature, amino acids sequence, description of Protein Function, Protein Image, Gene Ontology annotations (Biological Process, Molecular Function), Nucleotide Sequence, Orthologs, Literature citations, Human Disease annotations, DNA damage name, DNA damage chemical structure, DNA damage source names, DNA damage effects, Drug name, Drug chemical structure, Drug target in DNA network, links to tools and other databases. Domain
Standards
Guidelines

No guidelines defined
Semantic

No semantic standards defined
Syntax

No syntax standards defined
Access
Condition of Use

  • Free


Data Access
Curation Process

  • manual curation
Release Process

  • continuous release (live database)
  • monthly release of database dump
Versioning Process

  • no versioning policy
  • access to historical files available
Support
Support

rss
blog





Credits
Maintaining Organisations

  • Bioinformatics Center, Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan.
  • Department of Computing Science, University of Alberta, Edmonton, AB, Canada.
  • European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Computational Biology Center, Memorial Sloan-Kettering Cancer Center 1275 York Avenue, Box 460, New York, NY 10065, USA.
  • National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
Funding Organisations

  • NLM NIH HHS
  • Canadian Institutes of Health Research
  • NHGRI NIH HHS
  • NIGMS NIH HHS
Publications

Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res. 2011
 Pubmed:21051339
KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res. 2010
 Pubmed:19880382
DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Nucleic Acids Res. 2011
 Pubmed:21059682
Reactome: a database of reactions, pathways and biological processes. Nucleic Acids Res. 2011
 Pubmed:21067998
Pathway Commons, a web resource for biological pathway data. Nucleic Acids Res. 2011
 Pubmed:21071392
PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res. 2009
 Pubmed:19498078

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