biodbcore-000056

LegumeIP: An Integrative Database Platform for Comparative Genomics and Transcriptomics of Model Legumes
Model Legumes Integrative database Platform




Basics
Country

USA
Taxonomic range

Database scope and data types

  • genome sequence Domain
  • gene models including CDS and predicted proteins Domain
  • microarray-based and RNA-seq-based transcriptomic data Domain
  • Gene Ontology / Uniprot / KEGG -based annotations. Domain
Standards
Guidelines

No guidelines defined
Semantic

No semantic standards defined
Syntax

Access
Condition of Use

  • Free


Data Access

  • homepage
  • file download(txt,XML)
  • SQL database dump
Curation Process

  • automated curation[comprehensive annotation tools, including BLAST, InterProscan, Dagchainer,TribeMCL,OrthoMCL]
Release Process

  • annual release (if genomic sequences or gene models are updated in the five species)
Versioning Process

  • no versioning policy
  • access to historical files available
Support
Support

rss
blog





Credits
Maintaining Organisations


Comments


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