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ready Agile Protein Interactomes Dataserver

Abbreviation:APID Interactomes

General Information
APID Interactomes (Agile Protein Interactomes DataServer) provides information on the protein interactomes of numerous organisms, based on the integration of known experimentally validated protein-protein physical interactions (PPIs). The interactome data includes a report on quality levels and coverage over the proteomes for each organism included. APID integrates PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and also from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. This collection references protein interactors, through a UniProt identifier.

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Record updated: April 11, 2017, 2:34 p.m. by The BioSharing Team.


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Funding agency

Grant Number(s)

  • AC14/00024 (EU Joint Programme Neurodegenerative Disease Research JPND)

  • BIO/SA68/13 (Regional Government, Junta de Castilla y León)

  • PI12/00624 (Spanish Instituto de Salud Carlos III Instituto Nacional de Bioinformática)


APID interactomes: providing proteome-based interactomes with controlled quality for multiple species and derived networks.

Alonso-Lopez D,Gutierrez MA,Lopes KP,Prieto C,Santamaria R,De Las Rivas J
Nucleic Acids Res. 2016

View Paper (PubMed) View Paper (DOI)

APID: Agile Protein Interaction DataAnalyzer.

Prieto C., De Las Rivas J.,
Nucleic Acids Res 2006

View Paper (PubMed)

APID2NET: unified interactome graphic analyzer.

Hernandez-Toro J,Prieto C,De las Rivas J
Bioinformatics 2007

View Paper (PubMed) View Paper (DOI)