A catalogue of databases, described according to the BioDBcore guidelines, along with the standards used within them; partly compiled with the support of Oxford University Press (NAR Database Issue and DATABASE Journal) and Re3Data.org.



Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

GenBank GenBank Database ready

GlycoNAVI GlycoNAVI Database None None None ready

ADHDgene ADHDgene Database None None None ready

Allele frequency resource for research and teaching ALFRED Database None None None ready

Animal Transcription Factor Database AnimalTFDB Database None None None ready

Apo and Holo structures DataBase AH-DB Database None None None ready

Aspergillus Genome Database ASPGD Database None None None ready

BioSample at the European Bioinformatics Institute BioSD Database ready

Bitter Compounds Database BitterDB Database None None None ready

BuG@Sbase BuG@Sbase Database None None None ready

Bacterial protein tYrosine Kinase database BYKdb Database None None None ready

Central Aspergillus Data REpository CADRE Database None None None ready

canSAR: An integrated cancer translational research and drug discovery resource canSAR: An integrated cancer translational research and drug discovery resource Database None None None ready

CAPS-DB : a structural classification of helix-capping motifs CAPS-DB Database None None None ready

ChEMBL: a large-scale bioactivity database for drug discovery ChEMBL Database ready

Crystallography Open Database COD Database None ready

ConoServer ConoServer Database None None None ready

CoryneRegNet 6.0 - Corynebacterial Regulation Network CoryneRegNet Database None None None ready

Dragon Antimicrobial Peptide Database DAMPD Database None None None ready

Database of Aligned Ribosomal Complexes DARC Database None None None ready

DOMMINO: A comprehensive database of macromolecular interactions DOMMINO: A comprehensive database of macromolecular interactions Database None None None None ready

Database of Differentially Expressed Proteins in Human Cancer dbDEPC Database None None None ready

Database of Bacterial Exotoxins for Human DBETH Database None None None ready

DataBase of Transcriptional Start Sites DBTSS Database None None None ready

DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks DistiLD Database None None ready

The DNA Data Bank of Japan DDBJ Database ready

DNAtraffic: a new database for systems biology of DNA dynamics during the cell life DNAtraffic: a new database for systems biology of DNA dynamics during the cell life Database None None None None ready

doRiNA: a database of RNA interactions in post-transcriptional regulation doRiNA: a database of RNA interactions in post-transcriptional regulation Database None None None None ready

Human Disease-Related Viral Integration Sites Dr.VIS Database None None None ready

EcoliWiki: A Wiki-based community resource for Escherichia coli EcoliWiki: A Wiki-based community resource for Escherichia coli Database None None None ready

Evolutionary Genealogy of Genes: Non-supervised Orthologous Groups eggNOG Database None None None ready

Database of Eukaryotic Linear Motifs ELM Database None None None ready

Encyclopedia of DNA Elements at UCSC ENCODE Database None None ready

eQuilibrator - the biochemical thermodynamics calculator eQuilibrator - the biochemical thermodynamics calculator Database None None None None ready

ExoCarta ExoCarta Database None None None ready

FlyBase FlyBase Database ready

DRSC Functional Genomics Resources DRSC-FGR Database None None ready

FunCoup FunCoup Database None None None None ready

Fungal and Oomycete genomics resource FungiDB Database None None ready

FunTree: A Resource For Exploring The Functional Evolution Of Structurally Defined Enzyme Superfamilies FunTree Database None None ready

GABI-Kat SimpleSearch GABI-Kat Database None None None ready

Expression Atlas Expression Atlas Database ready

GeneDB GeneDB Database None None None ready

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures GeneSigDB: a manually curated database and resource for analysis of gene expression signatures Database None None None ready

HaploReg HaploReg Database None None None ready

Human Gene and Protein Database HGPD Database None None None ready

HIstome - A relational knowledge-base of human histone proteins and histone modifying enzymes HIstome - A relational knowledge-base of human histone proteins and histone modifying enzymes Database None None None ready

HmtDB, a genomic resource for Mitochondrion Based Human Variability studies HmtDB, a genomic resource for Mitochondrion Based Human Variability studies Database None None None None ready

HotRegion HotRegion Database None None None ready

Integrative and Conjugative Elements in Bacteria ICEberg Database None None None ready