A catalogue of databases, described according to the BioDBcore guidelines, along with the standards used within them; partly compiled with the support of Oxford University Press (NAR Database Issue and DATABASE Journal) and Re3Data.org.


Showing records 1 - 50 of 60.
Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks DistiLD Database None ready

DNAtraffic DNAtraffic Database None None None None ready

Human Disease-Related Viral Integration Sites Dr.VIS Database None None None ready

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants SNPeffect 4.0 Database None None ready

Autism Knowledgebase Autism KB Database None None ready

Human disease methylation database DiseaseMeth Database None None None ready

SpliceDisease SpliceDisease Database None None None uncertain

BRCA Share BRCA Share Database None None None None ready

Stem Cell Discovery Engine SCDE Database None None None deprecated

TDR Targets TDR Targets Database None None ready

TTD, Therapeutic Target Database TTD, Therapeutic Target Database Database None None None ready

Virulence Factor Database VFDB Database None None None ready

WormBase WormBase Database ready

Human Ageing Genomic Resources HAGR Database None None None ready

Comparative Toxicogenomics Database CTD Database None None ready

Allergome Allergome Database None None None ready

Telomerase Database Telomerase Database Database None None None ready

Therapeutically Relevant Multiple Pathways Database TRMP Database None None None None ready

BRENDA BRENDA Database None None ready

Toxoplasma Genomics Resource ToxoDB Database None ready

KinMutBase KinMutBase Database None None None None ready

Database of Protein Disorder DisProt Database None None ready

Rat Genome Database RGD Database ready

Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource MGI Database ready

ClinicalTrials.gov ClinicalTrials.gov Database ready

Drug Adverse Reaction Target DART Database None None None deprecated

Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) BioLINCC Database None None ready

BEI Resource Repository BEI Database None None ready

National Addiction & HIV Data Archive Program (NAHDAP) NAHDAP Database None None ready

NIDA Center on Genetics Studies NIDA CGS Database None None None ready

Transporter Classification Database TCDB Database None None ready

National Database for Autism Research (NDAR) NDAR Database ready

Biospecimens/Biorepositories: Rare Disease Hub (RD-HUB) RD-HUB Database None None None deprecated

Orphanet Orphanet Database None ready

Chemical Effects in Biological Systems (CEBS) CEBS Database None None ready

Type 1 Diabetes Database T1DBase Database None None ready

Domain mapping of disease mutations DMDM Database None None ready

DisGeNET: a database of gene-disease associations DisGeNET Database None None ready

MouseMine @ MGI MouseMine Database None None ready

Nuclear Receptor Signaling Atlas NURSA Database None ready

Immune Tolerance Network TrialShare TrialShare Database None None None ready

Parkinson's Progression Markers Initiative PPMI Database None None ready

Autism Brain Imaging Data Exchange ABIDE Database None None ready

ClinVar ClinVar Database None None ready

EORTC clinical trials EORTC Database None None None ready

Genomics England | PanelApp PanelApp Database None None None None ready

Type 2 Diabetes Knowledge Portal T2D KP Database None None None None ready

Online Mendelian Inheritance in Man OMIM Database None ready

The ITHANET Portal ITHANET Database None None None None ready

Wikidata Wikidata Database None None None in development