A catalogue of databases, described according to the BioDBcore guidelines, along with the standards used within them; partly compiled with the support of Oxford University Press (NAR Database Issue and DATABASE Journal) and Re3Data.org.


30 records in view

Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

Aspergillus Genome Database ASPGD Database None None None ready

GeneDB GeneDB Database None None None ready

Prokaryotic Glycoproteins Database ProGlycProt Database None None ready

UCSC Genome Browser database UCSC Genome Browser database Database None ready

Genomes OnLine Database GOLD Database None None None ready

SitEx database of eukaryotic protein functional sites SitEx Database None None None ready

Functional Coverage of the Proteome FCP Database None None uncertain

Gene Disruption Project Database GDP Database Database None None None None ready

Insertion Sequence Finder IS Finder Database None None None ready

European Patent Office - Protein and Nucleic Acid Sequences EPO Database None None None ready

Ligand-Gated Ion Channel database LGICdb Database None None None deprecated

MycoBrowser leprae MycoBrowser leprae Database None None ready

MycoBrowser marinum MycoBrowser marinum Database None None ready

MycoBrowser smegmatis MycoBrowser smegmatis Database None None None ready

MycoBrowser tuberculosis MycoBrowser tuberculosis Database None None None ready

BAliBASE BAliBASE Database None None None None ready

Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource MGI Database ready

Sequence Read Archive SRA Database ready

HOGENOM HOGENOM Database None None None ready

TargetTrack TargetTrack Database None None None ready

The Vertebrate Genome Annotation Database VEGA Database None None ready

PeroxiBase PeroxiBase Database None None None None ready

Structural and functional annotation of Arabidopsis thaliana gene and protein families GeneFarm Database None None None None uncertain

Saccharomyces cerevisiae Transcription Factor Database ScerTF Database None None None None ready

CentrosomeDB CentrosomeDB Database None None None ready

bNAber bNAber Database None None None None ready

NCBI Trace Archives NCBI Trace Archives Database None None ready

BioSample at the NCBI BioSample Database ready

CRISPRdb CRISPRdb Database None None None ready

Genome Sequence Archive GSA Database None None None ready