A catalogue of databases, described according to the BioDBcore guidelines, along with the standards used within them; partly compiled with the support of Oxford University Press (NAR Database Issue and DATABASE Journal) and Re3Data.org.


Showing records 1 - 50 of 89.
Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

The DNA Replication Origin Database OriDB Database None None None ready

PLEXdb PLEXdb Database None None ready

UCSC Genome Browser database UCSC Genome Browser database Database None ready

Immuno-Polymorphism Database IPD Database None None None ready

Human Endogenous Retrovirus database HERVd Database None None ready

Addgene Addgene Database None ready

Animal Genome Size Database AGSD Database None None None None ready

DNASU Plasmid Repository DNASU Plasmid Repository Database None None None ready

Telomerase Database Telomerase Database Database None None None ready

Drosophila polymorphism database DPD Database None None None ready

Beijing Genomics Institute Rice Information System BGI-RIS Database None None None ready

Chicken Variation Database ChickVD Database None None None ready

Influenza Virus Database IVDB Database None None None ready

Pig Genomic Informatics System PigGIS Database None None None ready

YanHuang - YH1 Genome Database YH1 Database None None None ready

The Barcode of Life Data Systems BOLD Database None None None ready

PROkariotIC Database Of Gene-Regulation PRODORIC Database None None None ready

Tandem Repeats Database TRDB Database None None None ready

Universal PBM Resource for Oligonucleotide Binding Evaluation UniPROBE Database None None None None ready

Erythropoiesis Database EpoDB Database None None None None ready

Database of Rice Transcription Factors DRTF Database None None None ready

Eukaryotic Paralog Group Database EPGD Database None None None None ready

The Database of Human DNA Methylation and Cancer MethyCancer Database None None None ready

PolyDoms PolyDoms Database None None None None ready

OryGenesDB: an interactive tool for rice reverse genetics OryGenesDB Database None None None ready

Oryza Tag Line OTL Database None None None ready

The Diatom EST Database The Diatom EST Database Database None None None ready

Plant Genome Network PGN Database None None deprecated

European Nucleotide Archive ENA Database ready

The European Searchable Tumour Line Database IPD-ESTDAB Database None None None ready

Killer-cell Immunoglobulin-like Receptors IPD-KIR Database None None None ready

Protein Data Bank in Europe PDBe Database ready

The Gene Index Project TIGR_TGI Database None None None deprecated

BAliBASE BAliBASE Database None None None None ready

Transmembrane Helices in Genome Sequences THGS Database None None None None ready

Colibri Colibri Database None None None ready

Mycoplasma pulmonis genome database MypuList Database None None None ready

Photorhabdus luminescens genome database PhotoList Database None None None ready

Streptococcus agalactiae NEM316 / Serotype III genome database SagaList Database None None None ready

Bacillus subtilis strain 168 genome SubtiList Database None None None ready

SoyBase SoyBase Database None None ready

Human Unidentified Gene-Encoded large proteins database HUGE Database None None None ready

ROdent Unidentified Gene-Encoded large proteins ROUGE Database None None None ready

Yeast Searching for Transcriptional Regulators and Consensus Tracking YEASTRACT Database None None None ready

Maize Genetics and Genomics Database MaizeGDB Database None ready

DragonDB DragonDB Database None None None ready

Rat Genome Database RGD Database ready

AceView Worm Genome AceView Worm Genome Database None None None ready

NCBI Cancer Chromosome Database Cancer Chromosomes Database None deprecated

Expressed Sequence Tags database dbEST Database None None ready