A catalogue of databases, described according to the BioDBcore guidelines, along with the standards used within them; partly compiled with the support of Oxford University Press (NAR Database Issue and DATABASE Journal) and Re3Data.org.


Showing records 1 - 50 of 138.
Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

GenBank GenBank Database ready

Aspergillus Genome Database ASPGD Database None None None ready

The DNA Data Bank of Japan DDBJ Database ready

FlyBase FlyBase Database ready

Networks of Functional Coupling of proteins FunCoup Database None None ready

GeneDB GeneDB Database None None None ready

IMG/M: the integrated metagenome data management and comparative analysis system IMG/M: the integrated metagenome data management and comparative analysis system Database None None ready

MAPPER-2 mapperdb Database None None None ready

Network of Cancer Genes NCG Database None None ready

The DNA Replication Origin Database OriDB Database None None None ready

Saccharomyces Genome Database SGD Database None ready

The Human OligoGenome Resource: A Database for Customized Targeted Resequencing Covering the Human Genome The Human OligoGenome Resource: A Database for Customized Targeted Resequencing Covering the Human Genome Database None None None uncertain

UCSC Genome Browser database UCSC Genome Browser database Database None ready

BacMap BacMap Database None None None ready

CUBE-DB CUBE-DB Database None None None ready

Gene3D Gene3D Database None None ready

Integrated Genomic Database of Non-Small Cell Lung Cancer IGDB.NSCLC Database None None None None ready

Predictive Networks Predictive Networks Database None None None uncertain

WormBase WormBase Database ready

Dfam Dfam Database None None None None ready

Human Endogenous Retrovirus database HERVd Database None None ready

Nottingham Arabidopsis Stock Centre Seeds Database NASC Database None None None ready

The Arabidopsis Gene Regulatory Information Server AGRIS Database None None None None ready

Animal Genome Size Database AGSD Database None None None None ready

Evolutionary Annotation Database Evola Database None None ready

DNASU Plasmid Repository DNASU Plasmid Repository Database None None None ready

Drosophila polymorphism database DPD Database None None None ready

Non-Redundant B.subtilis database NRSub Database None None None None ready

cis-Regulatory Element Database cisRED Database None None None ready

Chicken Variation Database ChickVD Database None None None ready

Influenza Virus Database IVDB Database None None None ready

Pig Genomic Informatics System PigGIS Database None None None ready

YanHuang - YH1 Genome Database YH1 Database None None None ready

Berkeley Drosophila Genome Project EST database BDGP Database None None ready

National Microbial Pathogen Data Resource NMPDR Database None None None ready

Human-Transcriptome Database for Alternative Splicing H-DBAS Database None None None deprecated

Cnidarian Evolutionary Genomics Database CnidBase Database None None None ready

StellaBase StellaBase Database None None None ready

Comparative Fungal Genomics Platform CFGP Database None None None ready

Magnaporthe grisea Database MGG Database None None None ready

The Autism Chromosome Rearrangement Database The Autism Chromosome Rearrangement Database Database None None None None ready

The Chromosome 7 Annotation Project The Chromosome 7 Annotation Project Database None None None ready

Catalogue of Transmission Genetics in Arabs CTGA Database None None None None ready

Insect Microsatellite Database InSatDb Database None None None None ready

Candida Genome Database CGD Database None None None ready

Shanghai Rapeseed Database SRD Database None None None ready

GreenPhylDB: A phylogenomic database for plant comparative genomics GreenPhyl Database None None ready

TropGENE DB TropGENE DB Database None None ready

Gramene, a comparative mapping resource for grains Gramene Database None None ready

PhylomeDB PhylomeDB Database None None None ready