A catalogue of databases, described according to the BioDBcore guidelines, along with the standards used within them; partly compiled with the support of Oxford University Press (NAR Database Issue and DATABASE Journal) and Re3Data.org.


34 records in view

Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

Aspergillus Genome Database ASPGD Database None None None ready

Dragon Antimicrobial Peptide Database DAMPD Database None None None ready

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures GeneSigDB: a manually curated database and resource for analysis of gene expression signatures Database None None None ready

Online GEne Essentiality database OGEE Database None None None ready

Prokaryotic Glycoproteins Database ProGlycProt Database None None ready

Rhea Rhea Database ready

Death Domain Database Death Domain Database Database None None None ready

MitoZoa MitoZoa Database None None None ready

PomBase PomBase Database None None ready

SNPedia SNPedia Database None None ready

Whole-Cell Knowledge Base WholeCellKB Database None None None ready

HOmo sapiens transcription factor COmprehensive MOdel COllection (HOCOMOCO) HOCOMOCO Database None None None ready

Plant Resistance Gene Database PRGdb Database None None None ready

Bacterial Carbohydrate Structure Database Bacterial Carbohydrate Structure Database Database None None None None ready

CellFinder CellFinder Database None None None ready

Mammalian Protein Localization Database LOCATE Database None None None ready

Database of Rice Transcription Factors DRTF Database None None None ready

Candida Genome Database CGD Database None None None ready

PRoteomics IDEntifications database PRIDE Database ready

Reactome - a curated knowledgebase of biological pathways Reactome Database ready

VirHostNet VirHostNet Database None None ready

Microbial Protein Interaction Database MPIDB Database None None None ready

Dryad Dryad Database None ready

Quantitative Trait Loci Archive QTL Archive Database None None ready

InnateDB InnateDB Database ready

CATH Protein Structure Classification CATH domain Database None None ready

Manually Curated Database of Rice Proteins MCDRP Database None None None ready

Database of Genomic Variants Archive DGVA Database None ready

MobiDB MobiDB Database None None ready

NanoMaterial Registry Nano Registry Database None None None ready

probeBase probeBase Database None None None ready

Ascidian Network for In Situ Expression and Embryological Data ANISEED Database None None ready

Rfam Rfam Database None None ready

SugarBind SugarBind Database None None ready