A catalogue of databases, described according to the BioDBcore guidelines, along with the standards used within them; partly compiled with the support of Oxford University Press (NAR Database Issue and DATABASE Journal) and Re3Data.org.


Showing records 1 - 50 of 174.
Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

Apo and Holo structures DataBase AH-DB Database None None None ready

Aspergillus Genome Database ASPGD Database None None None ready

Database of Differentially Expressed Proteins in Human Cancer dbDEPC Database None None None ready

Eukaryotic Linear Motifs ELM Database None None None ready

ExoCarta ExoCarta Database None None None ready

Networks of Functional Coupling of proteins FunCoup Database None None ready

Human Gene and Protein Database HGPD Database None None None ready

IntAct molecular interaction database IntAct Database ready

Minimotif Miner 3.0 MnM Database None None None ready

MitoMiner MitoMiner Database None None None ready

modMine modMine Database None None ready

Pfam Protein Families Pfam Database ready

Protein-Chemical Structural Interactions ProtChemSI Database None None None ready

Search Tool for Interactions of Chemicals STITCH Database None None ready

Nematode.net Nematode.net Database None None ready

Gene Wiki Gene Wiki Database None None None None ready

PASS2.4 PASS2.4 Database None None None ready

YMDB YMDB Database None None ready

Comparative Toxicogenomics Database CTD Database None None ready

mycoCLAP mycoCLAP Database None None None ready

GlycoProtDB GPDB Database None None None None ready

Telomerase Database Telomerase Database Database None None None ready

Mammalian Protein Localization Database LOCATE Database None None None ready

Functional Coverage of the Proteome FCP Database None None uncertain

Evolutionary Trace Evolutionary Trace Database None None None ready

BindingDB database of measured binding affinities BindingDB Database None ready

Non-Ribosomal Peptides Database NORINE Database None None None None ready

Agile Protein Interactomes Dataserver APID Interactomes Database None None ready

Ciona intestinalis Protein Database CIPRO Database None None None ready

PROkariotIC Database Of Gene-Regulation PRODORIC Database None None None ready

Structure, Interfaces and Alignments for Protein-Protein Interactions Database SNAPPI-DB Database None None None ready

Human-Transcriptome Database for Alternative Splicing H-DBAS Database None None None deprecated

Database of MHC Ligands and Peptide Motifs SYFPEITHI Database None None None None ready

Database of Liver Expression Profile dbLEP Database None None None None ready

Open Regulatory Annotation ORegAnno Database None None None None ready

MutDB MutDB Database None None None ready

Universal PBM Resource for Oligonucleotide Binding Evaluation UniPROBE Database None None None None ready

CutDB CutDB Database None None None None ready

Erythropoiesis Database EpoDB Database None None None None ready

Automatic molecular interaction predictions InteroPorc Database None None None ready

Cell Signaling Technology Pathway Database CST Database None None None None ready

PhosphoSite Plus PSP Database None None ready

SURFACE SURFACE Database None None None uncertain

Receptor Tyrosine Kinase database RTKdb Database None None None None ready

MiCroKiTS MiCroKiTS Database None None None None ready

Information system for G protein-coupled receptors (GPCRs) GPCRDB Database None None ready

FireDB FireDB Database None None None ready

PDB-REPRDB PDB-REPRDB Database None None None ready

DrugBank DrugBank Database None None ready

Gene Ontology Annotation GOA Database ready