A catalogue of databases, described according to the BioDBcore guidelines, along with the standards used within them; partly compiled with the support of Oxford University Press (NAR Database Issue and DATABASE Journal) and Re3Data.org.


44 records in view

Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

Animal Transcription Factor Database AnimalTFDB Database None None ready

DNAtraffic DNAtraffic Database None None None None ready

doRiNA doRiNA Database None None None None ready

Networks of Functional Coupling of proteins FunCoup Database None None ready

modMine modMine Database None None ready

Model Organism Protein Expression Database MOPED Database None None None uncertain

Protein Interaction Network Analysis PINA Database None None ready

UCSC Genome Browser database UCSC Genome Browser database Database None ready

Nematode.net Nematode.net Database None None ready

SitEx database of eukaryotic protein functional sites SitEx Database None None None ready

TarBase TarBase Database None None None None ready

WikiPathways WikiPathways Database None None ready

WormBase WormBase Database ready

Human Ageing Genomic Resources HAGR Database None None None ready

PTMcode PTMcode Database None None None None ready

Dfam Dfam Database None None None None ready

Worm Developmental Dynamics Database WDDD Database None None None None ready

GlycoProtDB GPDB Database None None None None ready

cis-Regulatory Element Database cisRED Database None None None ready

Bgee DataBase for Gene Expression Evolution Bgee Database None ready

Universal PBM Resource for Oligonucleotide Binding Evaluation UniPROBE Database None None None None ready

RNAiDB RNAiDB Database None None None ready

Receptor Tyrosine Kinase database RTKdb Database None None None None ready

MiCroKiTS MiCroKiTS Database None None None None ready

Eukaryotic Genes euGenes Database None None None ready

GermOnline GermOnline Database None None None ready

PeptideAtlas PeptideAtlas Database ready

AceView Worm Genome AceView Worm Genome Database None None None ready

Nematode Expression Pattern DataBase NextDB Database None None None ready

TargetTrack TargetTrack Database None None None ready

Interologous Interaction Database i2d Database ready

The mitochondrial DNA breakpoints database MitoBreak Database None None None None ready

miRTarBase miRTarBase Database None None None ready

FlyMine FlyMine Database None None ready

Compartmentalized Protein-Protein Interaction ComPPI Database None None None ready

Open Connectome Project OCP Database None None ready

NIDDK Information Network dkNET Database None None ready

GeneWeaver GeneWeaver Database None None ready

Super-Enhancer Archive SEA Database None None None None ready

SwissLipids SwissLipids Database None None ready

SSBD: Systems Science of Biological Dynamics SSBD Database None ready

Broad Bioimage Benchmark Collection BBBC Database None None None ready

C. elegans Natural Diversity Resource CeNDR Database None None None ready

Enzyme Portal Enzyme Portal Database None ready