Standards > terminology artifact > bsg-s000009


ready Cell Ontology

Abbreviation:CL


General Information
The Cell Ontology (CL) is a candidate OBO Foundry ontology for the representation of cell types. First described in 2005, the CL integrates cell types from the prokaryotic, fungal, and eukaryotic organisms. As a core component of the OBO Foundry, the CL merges information contained in species-specific anatomical ontologies as well as referencing other OBO Foundry ontologies such as the Protein Ontology (PR) for uniquely expressed biomarkers and the Gene Ontology (GO) for the biological processes a cell type participates in. The CL is under continuous revision to expand representation of cell types and to better integrate with other biomedical ontologies.


This record replaces or incorporates the following deprecated resources:

Homepage https://github.com/obophenotype/cell-ontology

Developed in European Union , United Kingdom , United States of America

Created in 2008

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Record updated: Aug. 3, 2016, 10:38 a.m. by delphinedauga.




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License

License: Creative Commons Attribution (CC-BY) 3.0 (3.0)

Applies to: Use of the resource

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Access / Retrieve Data

Conditions of Use

License: Creative Commons Attribution (CC-BY) 3.0 (3.0)

Applies to: Data use

Data Access




Connectivity
CL Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.

View in OBO Foundry.




Implementing Databases (4)
ModelDB
ModelDB provides an accessible location for storing and efficiently retrieving computational neuroscience models. ModelDB is tightly coupled with NeuronDB. Models can be coded in any language for any environment. Model code can be viewed before downloading and browsers can be set to auto-launch the models.

Stem Cell Discovery Engine
Comparison system for cancer stem cell analysis

CellFinder
CellFinder maps validated gene and protein expression, phenotype and images related to cell types.The data allow characterization and comparison of cell types and can be browsed by using the body browser and by searching for cells or genes. All cells are related to more complex systems such as tissues, organs and organisms and arranged according to their position in development. CellFinder provides long-term data storage for validated and curated primary research data and provides additional expert-validation through relevant information extracted from text.

Rat Genome Database
The Rat Genome Database is the premier site for genetic, genomic, phenotype, and disease data generated from rat research. It provides easy access to corresponding human and mouse data for cross-species comparison and its comprehensive data and innovative software tools make it a valuable resource for researchers worldwide.

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Publications

Logical development of the cell ontology.

Meehan TF,Masci AM,Abdulla A,Cowell LG,Blake JA,Mungall CJ,Diehl AD
BMC Bioinformatics 2011

View Paper (PubMed) View Paper (DOI)