Standards > terminology artifact > bsg-s000027


ready e-Mouse Atlas Project Anatomy Ontology

Abbreviation:EMAP


General Information
A structured controlled vocabulary of stage-specific anatomical structures of the mouse used within the e-Mouse Atlas Project.


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Record updated: Oct. 9, 2016, 8:36 p.m. by The BioSharing Team.


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Conditions of Use

License: Creative Commons Attribution (CC-BY) 3.0 (3.0)

Applies to: Data use




Connectivity
EMAP Ontology Display

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Related Standards

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Implementing Databases (4)
Bgee DataBase for Gene Expression Evolution
Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). Bgee is based exclusively on curated "normal", healthy, expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of normal gene expression. Bgee produces calls of presence/absence of expression, and of differential over-/under-expression, integrated along with information of gene orthology, and of homology between organs. This allows comparisons of expression patterns between species.

MouseMine @ MGI
A database of integrated mouse data from MGI, powered by InterMine. MouseMine is member of InterMOD, a consortium of model organism databases dedicated to making cross-species data analysis easier through ongoing coordination and collaborative system development.

e-Mouse Atlas
The e-Mouse Atlas (EMA) is a detailed model of the developing mouse. Its purpose is not only to provide information about the shape, gross anatomy and detailed histological structure of the mouse, but also to provide a framework into which information about gene function can be mapped. The spatial, temporal and anatomical integration achieved by mapping diverse data to the organism itself rather than simply to database tables, allows powerful computational analyses. The website presents 3D volumetric models of the embryo linked, in most cases, to comprehensive and detailed images of histological structure. The embryo models and anatomy in EMA are organized by standard developmental stage (TS. after Theiler, 1989) and age of the embryo in days post coitum (dpc.). Gene-expression and other image data is also available.

e-Mouse Atlas of Gene Expression
EMAGE is a database of in situ gene expression data in the mouse embryo. mRNA in situ hybridisation, protein immunohistochemistry, in situ transgenic reporter data, and in situ enhancer data is included. These are sourced from the community and curators take this data and describe it in a standardised way that allows data query and exchange. The description includes a text-based component but the unique aspect of EMAGE is its spatial annotation focus.

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Publications

EMAGE mouse embryo spatial gene expression database: 2014 update.

Richardson L,Venkataraman S,Stevenson P,Yang Y,Moss J,Graham L,Burton N,Hill B,Rao J,Baldock RA,Armit C
Nucleic Acids Res 2013

View Paper (PubMed) View Paper (DOI)