Standards > model/format > bsg-s000050


ready CellML


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General Information
CellML language is an open standard based on the XML markup language. CellML is being developed by the Auckland Bioengineering Institute at the University of Auckland and affiliated research groups. The purpose of CellML is to store and exchange computer-based mathematical models. CellML allows scientists to share models even if they are using different model-building software. It also enables them to reuse components from one model in another, thus accelerating model building.

Homepage http://www.cellml.org

Developed in Worldwide

Created in 2001

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This record is maintained by andre  ORCID

Record updated: Feb. 24, 2016, 3:46 p.m. by The BioSharing Team.




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Implementing Databases (3)
A repository of mathematical models of biological and biomedical systems
BioModels is a repository of computational models of biological processes. It allows users to search and retrieve mathematical models published in the literature. Many models are manually curated (to ensure reproducibility) and extensively cross-linked to publicly available reference information.

Experimental data repository for KInetic MOdels of biological SYStems
KiMoSys is a user-friendly platform that includes a public data repository of relevant published measurements, including metabolite concentrations (time-series and steady-state), flux data, and enzyme measurements in order to build ODE-based kinetic model. It is designed to search, exchange and disseminate experimental data (and associated kinetic models) for the systems modeling community.

Physiome Model Repository
The Physiome Model Repository (PMR) is the main online repository for the IUPS Physiome Project, providing version and access controlled repositories, called workspaces, for users to store their data. PMR also provides a mechanism to create persistent access to specific revisions of a workspace, termed exposures. Exposure plugins are available for specific types of data (e.g., CellML or FieldML documents) which enable customizable views of the data when browsing the repository via a web browser, or an application accessing the repository’s content via web services.



Publications

CellML: its future, present and past.

Lloyd CM,Halstead MD,Nielsen PF
Prog Biophys Mol Biol 2004

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Using CellML with OpenCMISS to Simulate Multi-Scale Physiology.

Nickerson DP,Ladd D,Hussan JR,Safaei S,Suresh V,Hunter PJ,Bradley CP
Front Bioeng Biotechnol 2015

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Cellular cardiac electrophysiology modeling with Chaste and CellML.

Cooper J,Spiteri RJ,Mirams GR
Front Physiol 2015

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OpenCOR: a modular and interoperable approach to computational biology.

Garny A,Hunter PJ
Front Physiol 2015

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The CellML 1.1 Specification.

Cuellar A,Hedley W,Nelson M,Lloyd C,Halstead M,Bullivant D,Nickerson D,Hunter P,Nielsen P
J Integr Bioinform 2015

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The CellML Metadata Framework 2.0 Specification.

Cooling MT,Hunter P
J Integr Bioinform 2015

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Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases.

Neal ML,Carlson BE,Thompson CT,James RC,Kim KG,Tran K,Crampin EJ,Cook DL,Gennari JH
PLoS One 2015

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Myokit: A simple interface to cardiac cellular electrophysiology.

Clerx M,Collins P,de Lange E,Volders PG
Prog Biophys Mol Biol 2016

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The Cardiac Electrophysiology Web Lab.

Cooper J,Scharm M,Mirams GR
Biophys J 2016

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