Standards > terminology artifact > bsg-s000134


ready Phenotypic QualiTy Ontology

Abbreviation:PATO

terminology artifact

General Information
PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily phenotype annotation. This ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes.

Record updated: March 9, 2016, 11:11 a.m. by allysonlister.




Tools

    No tools defined


Conditions of Use

License

No License Specified.


Schemas

No XSD schemas defined


Access / Retrieve Data

Conditions of Use

No License Specified.





Connectivity
PATO Ontology Display

View in BioPortal.


Disclaimer: This widget assumes the availability of the ontology resources in the NCBO BioPortal.



Implementing Databases (6)
zfishbook
Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides services for any size of GBT mutagenesis projects on zebrafish to encourage collaboration in the research community.

PomBase
PomBase is a model organism database that provides organization of and access to scientific data for the fission yeast Schizosaccharomyces pombe. PomBase supports genomic sequence and features, genome-wide datasets and manual literature curation as well as providing structural and functional annotation and access to large-scale data sets.

Stem Cell Discovery Engine
Comparison system for cancer stem cell analysis

The Zebrafish Model Organism Database
The Zebrafish Model Organism Database, ZFIN, serves as the primary community database resource for the laboratory use of zebrafish. We develop and support integrated zebrafish genetic, genomic, developmental and physiological information and link this information extensively to corresponding data in other model organism and human databases.

Ascidian Network for In Situ Expression and Embryological Data
Aniseed is a database designed to offer a representation of ascidian embryonic development at the level of the genome (cis-regulatory sequences, spatial gene expression, protein annotation), of the cell (cell shapes, fate, lineage) or of the whole embryo (anatomy, morphogenesis).

Open Targets
Open Targets designed and developed an integration and visualization platform that provides evidence about the association of known and potential drug targets with diseases. The platform is designed to support identification and prioritization of biological targets for follow-up. Each drug target is linked to a disease using integrated genome-wide data from a broad range of data sources. The platform provides either a target-centric workflow to identify diseases that may be associated with a specific target, or a disease-centric workflow to identify targets that may be associated with a specific disease. Users can easily transition between these target- and disease-centric workflows.

Scroll for more...


Implementing Policies

This record is not implemented by any policy.


Credit

Record Maintainer

  • This record is in need of a maintainer. If you login, you'll be able to claim this record.

Maintainer


Publications

Using ontologies to describe mouse phenotypes.

Gkoutos GV,Green EC,Mallon AM,Hancock JM,Davidson D
Genome Biol 2005

View Paper (PubMed) View Paper (DOI)

Integrating phenotype ontologies across multiple species.

Mungall CJ,Gkoutos GV,Smith CL,Haendel MA,Lewis SE,Ashburner M
Genome Biol 2010

View Paper (PubMed) View Paper (DOI)