Standards > reporting guideline > bsg-s000175


ready Core Information for Metabolomics Reporting

Abbreviation:CIMR


General Information
This document specifies the minimal guidelines reporting metabolomics work. It does so in a textual form and seeks in the long term to cover all application areas and analysis technologies.


This record is maintained by salek  ORCID

Record updated: July 27, 2016, 1:16 p.m. by The BioSharing Team.



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Related Standards

Reporting Guidelines

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No syntax standards defined


Implementing Databases (2)
Plantmetabolomics.org
Arabidopsis metabolomics database which provides researchers with resources to investigate the function of genes and metabolites.

MetaboLights
MetaboLights is a database for Metabolomics experiments and derived information. The database is cross-species, cross-technique and covers metabolite structures and their reference spectra as well as their biological roles, locations and concentrations, and experimental data from metabolic experiments. We offer user-submission tools and have strong reporting capabilities. We will utilise and further develop de-facto standard formats where various components are encapsulated, such as the encoded spectral and chromatographic data, and associated information about the chemical structure, as well as metadata describing assays and the study as a whole. We are dedicated to collaborate closely with major parties in world-wide metabolomics communities, such as the Metabolomics Society and the associated Metabolomics Standards Initiative (MSI).

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Publications

Minimum reporting standards for plant biology context information in metabolomic studies

Oliver Fiehn, Lloyd W. Sumner, Seung Y. Rhee, Jane Ward, Julie Dickerson, Bernd Markus Lange, Geoff Lane, Ute Roessner, Robert Last, Basil Nikolau
Metabolomics 2007

View Paper (DOI)

Standard reporting requirements for biological samples in metabolomics experiments: environmental context

Norman Morrison, Dan Bearden, Jacob G. Bundy, Tim Collette, Felicity Currie, Matthew P. Davey, Nathan S. Haigh, David Hancock, Oliver A. H. Jones, Simone Rochfort, Susanna-Assunta Sansone, Dalibor Štys, Quincy Teng, Dawn Field, Mark R. Viant
Metabolomics 2007

View Paper (DOI)