Standards > reporting guideline > bsg-s000543


ready Minimum Information about Plant Phenotyping Experiment

Abbreviation:MIAPPE


General Information
MIAPPE is a reporting guideline for plant phenotyping experiments. It comprises a checklist, i.e., a list of attributes to describe an experiment so that it is understandable and replicable. It should be consulted by people recording and depositing plan phenotyping data. MIAPPE covers the description of the following aspects of plant phenotyping experiment: study, environment, experimental design, sample management, biosource, treatment and phenotype. A basic reference implementation of MIAPPE has been proposed for the ISA-Tab format. Other current developments include a Breeding API (BrAPI) implementation.



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Record updated: April 11, 2017, 4:22 p.m. by hcwi.


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Implementing Databases (2)
Plant Genomics and Phenomics Research Data Repository
This repository provides several plant genomic and phenotpyic datasets resulting from IPK and German Plant Phenotyping Network (DPPN) research activities. It was established in January 2015. The background of the study is in plant genetic resources, in particular the association of genotypes and phenotypes. This archive aims to provide data from the "system plant" - from the root to bloom and seed, as well from sequence analysis to systems biology.Ge

Genetic and Genomic Information System
GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.

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Publications

Towards recommendations for metadata and data handling in plant phenotyping.

Krajewski P, Chen D, Cwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S
J Exp Bot 2015

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Measures for interoperability of phenotypic data: minimum information requirements and formatting

Cwiek-Kupczynska, H.; Altmann, T.; Arend, D.; Arnaud, E.; Chen, D.; Cornut, G.; Fiorani, F.; Frohmberg, W.; Junker, A.; Klukas, C.; Lange, M.; Mazurek, C.; Nafissi, A.; Neveu, P.; van Oeveren, J.; Pommier, C.; Poorter, H.; Rocca-Serra, P.; Sansone, S.; Scholz, U.; van Schriek, M.; Seren, U.; Usadel, B.; Weise, S.; Kersey, P. Krajewski, P.
Plant Methods 2016

View Paper (PubMed) View Paper (DOI)