Computational Modeling
A collection of the standards and databases covering all aspects of computational modelling. This collection also includes the standards found in the COMBINE Collection.

This record is maintained by: PeteMcQ   ORCID

Record added: May 19, 2016, 11:41 a.m..
Record updated: Oct. 5, 2016, 11:06 a.m. by allysonlister.



Taxonomic range



26 records in view

Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status
BioModels Ontology BioModels Standard None None ready

Biological Pathway eXchange BioPAX Standard None ready

CellML CellML Standard ready

Chemical Markup Language CML Standard None None ready
Computational Neuroscience Ontology CNO Standard None None None ready

Human Physiom Field Markup Language FieldML Standard None ready
General Formal Ontology GFO Standard None None ready

JWS Online JWS Online Database ready
Kinetic Simulation Algorithm Ontology KiSAO Standard None None ready
Mathematical Modelling Ontology MAMO Standard None ready

Minimal Information Required In the Annotation of Models MIRIAM Standard ready

Neural Open Markup Language NeuroML Standard None None ready

Numerical Markup Language NuML Standard None None ready

Open Modeling EXchange format OMEX Standard None None ready

Pharmacometrics Markup Language PharmML Standard None None ready

Physiome Model Repository PMR Database None None ready

Ontology and Knowledge Base of Probability Distributions ProbOnto Database None None None ready

Systems Biology Graphical Notation SBGN Standard None ready

Systems Biology Markup Language SBML Standard ready
Systems Biology Ontology SBO Standard None None ready

Synthetic Biology Open Language SBOL Standard None ready

Synthetic Biology Open Language Visual SBOL Visual Standard None
None None None ready

Simulation Experiment Description Markup Language SED-ML Standard None ready
TErminology for the Description of DYnamics TEDDY Standard None None ready

Tumor model repositories Markup Language TumorML Standard None None None ready

Virtual Parts Repository VPR Database None
None None None ready