The NormSys Registry for Modeling Standards
This registry aims at surveying standard formats for computational modeling in biology. It not only lists the standards, but also compares their major features and versions, their possible fields of biological application and use cases (including model examples), as well as their relationships, commonalities and differences. This registry provides a common entry point for modelers and software developers who plan to apply the standards for their respective case of application, and serves them with detailed information and links to the standards, their specifications and APIs. The information provided in this system does not claim to be complete or all-encompassing, nor can we guarantee any absence of defectiveness. However, we collect and assemble the information to the best of our knowledge and belief to to assist in selecting the appropriate standard format for your specific requirements. Please note that the system is work in progress and is constantly revised and extended. Any feedback and suggestions for corrections or improvements, as well as for new fields of applications to be included (with example models) are highly welcome.
This record has no maintainer.

Record added: Oct. 5, 2016, 12:07 p.m..
Record updated: Feb. 9, 2017, 2:46 p.m. by allysonlister.

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Taxonomic range

9 records in view

Registry Name Abbreviation Type Domain Taxonomy Related Database Related Standard Related Policy In Collection/Recommendation Status

CellML CellML Standard ready

Human Physiom Field Markup Language FieldML Standard None ready

Neural Open Markup Language NeuroML Standard None None ready

Pharmacometrics Markup Language PharmML Standard None None ready

Systems Biology Graphical Notation SBGN Standard None ready

Systems Biology Markup Language SBML Standard ready

Synthetic Biology Open Language SBOL Standard None ready

Synthetic Biology Open Language Visual SBOL Visual Standard None
None None None ready

Simulation Experiment Description Markup Language SED-ML Standard None ready